Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Composition of ultra-minimal substrate growth medium | Portable Document Format file (.pdf) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.12781193.v1 [7] |
Data file 2 | Quality distribution of Illumina reads | Portable Network Graphic file (.png) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13490967.v1 [11] |
Data file 3 | Basic quality statistics of GridION sequencing data | Portable Document Format file (.pdf) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13491147.v1 [13] |
Data file 4 | Average GridION read quality plot | Portable Network Graphic file (.png) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13491210.v1 [14] |
Data file 5 | Quast report | Portable Document Format file (.pdf) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13491228.v1 [17] |
Data file 6 | Short BUSCO summary | Portable Document Format file (.pdf) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13491234.v1 [19] |
Data file 7 | Assembly graph | Portable Network Graphic file (.png) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.14370608.v1 [21] |
Data file 8 | Predicted Genomic Islands of P. fragi A13BB | Portable Document Format file (.pdf) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13491300.v1 [30] |
Data file 9 | Metabolic pathways of interest in P. fragi A13BB and associated gene clusters | Portable Document Format file (.pdf) | https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.13507971.v1 [31] |
Data set 1 | Illumina and GridION sequencing reads | Fastq file (.fastq.gz) | |
Data set 2 | Genome assembly of P. fragi A13BB | Fasta file (.fna) |