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Table 2 Overlap (%) between random-, FST-, or effect-preselected marker subsets and G2 SNPs

From: Dissection of the impact of prioritized QTL-linked and -unlinked SNP markers on the accuracy of genomic selection1

Selection methoda

Number of preselected SNPs (in thousands)

1

10

20

30

40

50

Random

6.75

6.65

6.63

6.64

6.63

6.69

FST

99.99

67.04

47.19

37.84

32.26

28.45

Effect

100.00

76.07

54.13

43.13

36.42

31.89

  1. a SNPs were preselected either randomly, based on their FST scores, or based on the absolute value of their estimated effect
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BMC Genomic Data

ISSN: 2730-6844

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