Table 1 Overview of all data files/data sets
From: Draft genome and transcriptome of Nepenthes mirabilis, a carnivorous plant in China
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Figure 1 A scheme chart to show the steps of genome assembly | Image file (.tif) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22336990 [18] |
Data file 2 | Raw WGS reads | Fastq file (.fastq) | NCBI Sequence Read Archive, https://identifiers.org/ncbi/ insdc.sra:SRR21047306 [23] |
Data file 3 | Raw RNA reads of leaf tissues | Fastq file (.fastq) | NCBI Sequence Read Archive, https://identifiers.org/ncbi/ insdc.sra:SRR21674160 [24] |
Data file 4 | Raw RNA reads of flower tissues | Fastq file (.fastq) | NCBI Sequence Read Archive, https://identifiers.org/ncbi/ insdc.sra:SRR21674159 [25] |
Data file 5 | Figure 2 Genome size estimation by a) KmerGenie, b-l) GenomeScope | Image file (.tif) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22336996 [26] |
Data file 6 | Transcriptome assembly | Fasta file (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22336999 [27] |
Data file 7 | ORF- nucleotide sequences | Fasta file (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337008 [28] |
Data file 8 | ORF- translated sequences | Fasta file (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337200 [29] |
Data file 9 | BUSCO assessment of transcriptome assembly | Text (.txt) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337203 [30] |
Data file 10 | Figure 3 Summary of GO annotation of open reading frames for the Nepenthes mirabilis transcriptome | Image file (.tif) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337206 [31] |
Data file 11 | GO annotation of open reading frames for the Nepenthes mirabilis transcriptome | Text (.txt) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337209 [32] |
Data file 12 | Pfam annotation of open reading frames for the Nepenthes mirabilis transcriptome | Text (.txt) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337212 [33] |
Data file 13 | Assembled genome | Fasta file (.fasta) | NCBI Nucleotide, |
Data file 14 | BUSCO assessment for genome assembly | Text (.txt) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337215 [35] |
Data file 15 | Repeat annotation in the genome assembly | Text (.bed) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337218 [36] |
Data file 16 | Predicted gene | Gff3 file (.gff3) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337221 [37] |
Data file 17 | Predicted genes - nucleotide sequences | Fasta file (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337224 [38] |
Data file 18 | Predicted genes - translated sequences | Fasta file (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337227 [39] |
Data file 19 | Gene annotation using GO, Pfam, interPro and UniProt databases | Text (.txt) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337230 [40] |
Data file 20 | Gene annotation from eggNOG-mapper analysis | Text (.txt) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.22337236 [41] |