Fig. 2

Manhattan plot for coat color and linkage disequilibrium in the top SNP region. (A) Genome-wide Manhattan plot; (B) Manhattan plot in the top SNP region; (C) Linkage disequilibrium in the top SNP region. The x axis indicates the position and chromosome of each SNP, and the y axis is the negative common logarithm of the P value. The solid and dashed horizontal lines show the 1% and 5% genome-wide significant levels, respectively