Table 2 Genes in the chloroplast genome of Caragana species

Self-replication

Proteins of large ribosomal subunit

rpl14, rpl16^a, rpl2^a, rpl20, rpl23, rpl32, rpl33, rpl36

Proteins of small ribosomal subunit

rps11, rps12^a, rps14, rps15, rps18, rps19, rps2, rps3, rps4, rps7, rps8

Subunits of RNA polymerase

rpoA, rpoB, rpoC1^a, rpoC2

Ribosomal RNAs

rrn16, rrn23, rrn4.5, rrn5

Transfer RNAs

trnA-UGC^a, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC^a, trnH-GUG, trnI-CAU, trnI-GAU^a, trnK-UUU^a, trnL-CAA^a, trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC^a, trnW-CCA, trnY-GUA, trnfM-CAU

Photosynthesis

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunits of NADH dehydrogenase

ndhA^a, ndhB^a, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome b/f complex

petA, petB^a, petD^a, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF^a, atpH, atpI

Large subunit of rubisco

rbcL

Other genes

Maturase

matK

Protease

clpP

Envelope membrane protein

cemA

Acetyl-CoA carboxylase

accD

c-type cytochrome synthesis gene

ccsA

Unknown

Conserved hypothetical chloroplast ORF

ycf1, ycf2, ycf3^b, ycf4