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Table 1 Overview of data files/data sets

From: De novo genome assembly of a high-protein soybean variety HJ117

Label

Name of data file/data set

File type (file extension)

Data repository and identifier (DOI or accession number)

Data file1

Statistics on sequence data

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [12]

Data file2

Hi-C raw data

Fastq file (.fastq)

NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA014073 [13]

Data file3

Assembly statistics of HJ117

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [15]

Data file4

genome.fa

Fasta file (.fasta)

NGDC Genome warehouse, https://ngdc.cncb.ac.cn/gwh/Assembly/83716/show [16]

Data file5

Hi-C interaction heatmap

Image file (.tif )

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [17]

Data file6

Assessment results of CEGMA and BUSCO

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [20]

Data file7

Results of transposable element classification statistics

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [23]

Data file8

Results of gene structure prediction

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [25]

Data file9

Glycine.max.gene.gff

Gff file (.gff)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [26]

Data file10

Genome annotation of HJ117

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [27]

Data file11

Overview of the HJ117 reference genome

Image file (.tif )

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [28]

Data file12

Statistics on non-coding RNA annotation results

Spreadsheet (.xls)

Figshare,https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [31]

Data file13

Raw RNA reads of leaf tissues

Fastq file (.fastq)

NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA014073 [34]

Data file14

HiFi raw data

Fastq file (.fastq)

NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA014073 [35]

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BMC Genomic Data

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