Table 1 Gene annotation of the chloroplast genome of O. nudicaulis

Photosynthesis

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunits of NADH dehydrogenase

ndhA*, ndhB*(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome b/f complex

petA, petB*, petD*, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF*, atpH, atpI

Large subunit of rubisco

rbcL

Self-replication genes

Large subunit of ribosomal

rpl14, rpl16*, rpl2*(2), rpl20, rpl22, rpl23(2), rpl32, rpl33, rpl36

Small subunit of ribosomal dependent RNA polymerase

#rps19, rps11, rps12**(2), rps14, rps16*, rps18, rps19, rps2, rps3, rps, rps7(2), rps8

DNA dependent RNA polymerase

rpoA, rpoB, rpoC1*, rpoC2

Ribosomal RNAs

rrn16(2), rrn23(2), rrn4.5(2), rrn5(2)

Transfer RNAs

trnA-UGC*(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA(2), trnG-GCC, trnG-UCC*, trnH-GUG, trnI-CAU(2), trnI-GAU*(2), trnK-UUU*, trnL-CAA(2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC*, trnW-CCA, trnY-GUA, trnfM-CAU

Other genes

Maturase

matK

ATP ATP-dependent protease subunit P

clpP**

Envelope membrane protein

cemA

Subunit of Acetyl-CoA carboxylase

accD

c-type cytochrome synthesis gene

ccsA

Translation initiation factor

infA

Genes of unknown function

Conserved hypothetical chloroplast ORF

#ycf1, ycf1, ycf2(2), ycf3**, ycf4