Table 1 Overview of data files/data sets
From: Draft assembly and annotation of the Cuban crocodile (Crocodylus rhombifer) genome
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Table 1, Data file 1 Detailed description of the methodology | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 2 | Table 1, Data file 2 Photos of Cuban crocodiles | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 3 | Table 1, Data file 3_C.rhombifer10X_Assembly_statistics | Spreadsheet (.xlsx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 4 | Table 1, Data file 4 BUSCO Comparisons | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 5 | Table 1, Data file 5 Interspersed Repeat landscape | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 6 | Table 1, Data file 6 Percentages of repeat elements | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 7 | Table 1, Data file 7 C.rhombifer10X_Pannzer | Portable document format (.pdf) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 8 | Table 1, Data file 8 Venn diagram | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 9 | Table 1, Data file 9 GO_counts_Table | Spreadsheet (.xlsx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 10 | Table 1, Data file 10_Orthofinder_Results_Crocs_Only | Spreadsheet (.xlsx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 11 | Table 1, Data file 11_Statistics_PerSpecies | Spreadsheet (.xlsx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 12 | Table 1, Data file 12 Concordance factor statistics | Spreadsheet (.xlsx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data file 13 | Table 1, Data file 13 Phylogeny | Microsoft Word (.docx) | Figshare: https://doi.org/10.6084/m9.figshare.25388386 [32] |
Data set 1 | Sequencing reads of C. rhombifer genomic DNA | Fastq files (.fq.gz) | NCBI SRA Database: SAMN36978604 https://identifiers.org/ncbi/bioproject:PRJNA1005273 [33] |
Data set 2 | Genomic Assembly of C. rhombifer | Fasta file (.fa) | NCBI GenBank Database: JAVSML000000000 https://identifiers.org/nucleotide:JAVSML000000000 [34] |