Table 1 Overview of data files/data sets
From: A chromosome-level genome assembly and annotation of the medicinal plant Lepidium apetalum
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | K-mer analysis for estimating genome size of L. apetalum | Image file (.jpg) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25560747.v1 [16] |
Data file 2 | The assembly statistics of L. apetalum genome | Word file (.docx) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25562490.v1 [17] |
Data file 3 | Heatmap of Hi-C assembly chromosome interactions | Image file (.jpg) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25562910.v1 [18] |
Data file 4 | Circos plot of L. apetalum genome | Image file (.jpg) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25562925.v1 [19] |
Data file 5 | The statistics of genome annotation | Word file (.docx) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25563267.v1 [20] |
Data file 6 | The detailed experimental methodology | Word file (.docx) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25569060.v4 [21] |
Data file 7 | The integrated function annotation of L. apetalum genome | Excel file (.xls) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25902172.v1 [22] |
Data file 8 | Gene function annotation for all transcriptomes | Excel file (.xls) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25902433.v1 [23] |
Data set 1 | Illumina survey data of L. apetalum genome | Fasta files (.fasta) | Identifier, http://identifiers.org/insdc.sra:SRX23808217 [24] |
Data set 2 | PacBio reads of L. apetalum genomic DNA | Fasta files (.fasta) | Identifier, http://identifiers.org/insdc.sra:SRX23808218 [25] |
Data set 3 | Hi-C reads of L. apetalum genomic DNA | Fasta files (.fasta) | Identifier, http://identifiers.org/insdc.sra:SRX24109656 [26] |
Data set 4 | Transcriptome data of different tissues (stem_young, leaf_young, root, stem_old, seed_young, and leaf_old, respectively) | Fasta files (.fasta) | Identifier, http://identifiers.org/insdc.sra:SRX24178224, http://identifiers.org/insdc.sra:SRX24178223, http://identifiers.org/insdc.sra:SRX24178222, http://identifiers.org/insdc.sra:SRX24178221, |
Data set 5 | Genome assembly data for L. apetalum | Fasta files (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25902229.v2 [28] |
Data set 6 | Gene CDS and annotated proteins of L. apetalum | Fasta files (.fasta) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25913245.v1 [29] |