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Table 2 Characterization of consensus ROH shared by more than 80% of the mink population and the annotated genes in the corresponding regions

From: Identification of consensus homozygous regions and their associations with growth and feed efficiency traits in American mink

Chr

Start

End

Length (bp)

Frequency (%)a

No. SNPs

Annotated genes

6

122,500,609

122,510,002

9,394

86.24

5

CD86

6

122,846,667

122,881,153

34,487

84.63

6

GOLGB1

6

122,908,246

122,958,392

50,147

84.33

5

FBXO40; GOLGB1; HCLS1

6

100,386,881

100,611,871

224,991

82.92

14

-

6

121,883,426

122,139,161

255,736

82.02

6

SLC49A4; PARP9; DTX3L; LOC122908877; PARP14; HSPBAP1; LOC122911033

2

45,138,611

45,265,052

126,442

81.92

19

-

2

45,100,650

45,130,801

30,152

81.88

6

-

6

120,478,852

120,531,357

52,506

81.41

6

KALRN

6

120,546,042

120,564,621

18,580

81.41

5

KALRN

1

217,785,451

217,894,574

109,124

80.17

5

LOC122897674

  1. a Percentage of the population presented this ROH.
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BMC Genomic Data

ISSN: 2730-6844

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