Table 3 Regions of runs of homozygosity (ROH) significantly associated with growth and feed efficiency traits in American mink
Chr | Start | End | Length (bp) | Associated traits | P-valuea | Frequency (%)b | No. SNPs | Candidate genes |
|---|---|---|---|---|---|---|---|---|
1 | 233,051,034 | 233,378,886 | 327,853 | RFI | 0.0038 | 47.9 | 20 | PPP2R2B |
1 | 84,492,422 | 84,643,650 | 151,229 | RG; RIG | 0.0094; 0.0084 | 69.6 | 5 | MDGA1 |
1 | 268,594,555 | 268,631,729 | 37,175 | HW | 0.0064 | 39.3 | 7 | THG1L |
4 | 20,9695,778 | 209,720,164 | 24,387 | FBL | 0.00027 | 66.6 | 5 | COPG2 |
2 | 45,138,611 | 45,265,052 | 126,442 | FBL; FBW; RFI | 0.0014; 0.0016; 0.0065 | 81.9 | 19 | - |
5 | 42,989,622 | 43,198,887 | 209,266 | FBL | 0.0063 | 20.8 | 5 | - |
1 | 32,128,510 | 32,316,405 | 187,896 | FBW; HW | 0.0034; 0.0051 | 16.1 | 11 | POU3F2; FBXL4; LOC122913962 |
5 | 130,209,831 | 130,237,085 | 27,255 | DFI | 0.0069 | 15.1 | 5 | KLHL1 |
13 | 85,787,981 | 86,060,018 | 272,038 | KR | 0.0066 | 10.9 | 5 | MGA; OIP5; NUSAP1; RTF1; LTK; RPAP1; NDUFAF1; ITPKA; TYRO3; LOC122894302; LOC122894795; LOC122894805; LOC122894585 |
9 | 10,609,898 | 10,786,369 | 176,472 | RG | 0.0023 | 10.9 | 6 | LHX2 |
13 | 134,704,541 | 13,500,3083 | 298,543 | RFI | 0.0034 | 9.9 | 6 | LYSMD4; ADAMTS17; MEF2A |
8 | 134,262,073 | 134,331,827 | 69,755 | HW | 0.0062 | 6.6 | 5 | - |
1 | 69,893,506 | 69,902,125 | 8,620 | HW; ADG | 0.0047; 0.0065 | 55.1 | 7 | AKAP7 |