Table 1 Overview of all data files/data sets
From: Draft genome of Roscoea Debilis, the first genome in the alpine ginger Roscoea (Zingiberaceae)
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Raw long whole genome Hi-Fi sequencing reads 1 | Fasta file (.fastq) | CNCB Big sub-Genome Sequence Archive (GSA) Accession number CRA015916 https://ngdc.cncb.ac.cn/gsa/browse/CRA015916/CRR1112174 [25] |
Data file 2 | Raw long whole genome Hi-Fi sequencing reads 2 | Fasta file (.fastq) | CNCB Big sub-Genome Sequence Archive (GSA) Accession number CRA015916 https://ngdc.cncb.ac.cn/gsa/browse/CRA015916/CRR1112175 [26] |
Data file 3 | Raw short whole genome Illumina sequencing reads | Fasta file (.fastq) | CNCB Big sub-Genome Sequence Archive (GSA) Accession number CRA015916 https://ngdc.cncb.ac.cn/gsa/browse/CRA015916/CRR1112173 [27] |
Data file 4 | Raw RNA-seq reads | Fasta file (.fastq) | CNCB Big sub-Genome Sequence Archive (GSA) Accession number CRA015916 https://ngdc.cncb.ac.cn/gsa/browse/CRA015916/CRR1136897 [28] |
Data file 5 | Raw Hi-C reads | Fasta file (.fastq) | CNCB Big sub-Genome Sequence Archive (GSA) Accession number CRA015916 https://ngdc.cncb.ac.cn/gsa/browse/CRA015916/CRR1112176 [29] |
Data file 6 | Assembled genome | Fasta file (.fa) | CNCB Big sub-Genome Warehouse (GWH) Accession number GWHESOX00000000 https://ngdc.cncb.ac.cn/gwh/Assembly/84773/show [30] |
Data file 7 | BUSCO assessment of the assembly using Embryphyta database | 7z file (.7z) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 8 | Hi-C clustering heat map | pdf file (.pdf) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 9 | Predicted gene | Gff3 file (.gff3) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 10 | Predicted gene - CDS | Fasta file (.fas) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 11 | Predicted gene - Protien | Fasta file (.fas) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 12 | Predicted repetitive sequences | Gff file (.gff) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 13 | Genome feature statistics | 7z file (.7z) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |
Data file 14 | Gene annotation using GO, KO, interPro, Pfam, KEGG, SwissProt, Meryl, and SwissProt databases | 7z file (.7z) | Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.25712205.v2 [31] |