Table 1 Overview of data files/data sets
From: Chromosome-scale assembly of apple mint (Mentha suaveolens)
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Raw Hi-C reads | Fastq file (.fq) | NCBI SRA Accession number SRP507005 |
Data file 2 | Raw Chicago reads | Fastq file (.fq) | NCBI SRA Accession number SRP507005 |
Data file 3 | Assembled genome | Fasta file (.fa) | Figshare: https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26938906.v1 [10] |
Data file 4 | Predicted genes | Gff3 file (.gff3) | Figshare: https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26938906.v1 [10] |
Data file 5 | Predicted genes – CDS | Fasta file (.fa) | Figshare: https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26938906.v1 [8] |
Data file 6 | Predicted repetitive sequences | Gff3 file (.gff3) | Figshare: https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26938906.v1 [10] |
Data file 7 | Assembled genome | Fasta file (.fa) | NCBI GenBank Genome Assembly ID GCA_041501505.1 https://identifiers.org/ncbi/insdc.gca:GCA_041501505.1 [11] |
Data set 1 | Raw RNA-seq reads | Fastq file (.fq) | NCBI SRA Accession number SRP507005 |
Data set 2 | Raw PacBio reads | PacBio basecall format (bax.h5) | NCBI SRA Accession number SRP507005 |