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Table 4 PMS2 exons predicted to be prone to exon skipping, based on ESEs and ESSs densities and ESS/ESE ratio

From: In silico splicing analysis of the PMS2 gene: exploring alternative molecular mechanisms in PMS2-associated Lynch syndrome

Software

Low ESEs density

Mean

(CI 90%)

High ESSs density

Mean

(CI 90%)

High ESS/ESE ratio

Mean

(CI 90%)

ESEfinder 3.0

3, 7, 10, 13

17.23

(14.26–20.19)

-

-

-

-

HExoSplice

2, 3, 9, 10

21.96

(17.91–26.01)

2, 6, 7, 10

26.65

(21.63–31.67)

2, 6, 9, 10

119.86

(89.60–150.11)

HOT-SKIP

8, 9

80.26

(75.13–85.39)

6, 7, 10, 13

57.72

(52.26–63.18)

6, 7, 9, 10, 13

74.03

(63.67–84.39)

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BMC Genomic Data

ISSN: 2730-6844

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