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Table 1 Overview of data files/data sets

From: A resource of longitudinal RNA-seq data of Holstein cow rumen, duodenum, and colon epithelial cells during the lactation cycle

Label

Name of data file/data set

File types (file extension)

Data repository and identifier (DOI or accession number)

Data file 1

Raw RNA-seq data

SRA file (.fastq)

NCBI SRA under the SRA ID SRP441033 [15]

Data file 2

Figure 1. The workflow for this study comprised data collection and technical analysis.

Document file (.pdf)

Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27275463.v1 [7]

Data file 3

Figure 2. RNA-seq quality check summary.

Document file (.pdf)

Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27275463.v1 [7]

Data file 4

Figure 3. The mapping rate and numbers of mapping reads with different lactation stages across three tissues.

Document file (.pdf)

Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27275463.v1 [7]

Data file 5

Figure 4. Summary based on gene expression.

Document file (.pdf)

Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27275463.v1 [7]

Data file 6

Figure 5. The number of differentially expressed genes between all possible pairwise comparison groups.

Document file (.pdf)

Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27275463.v1 [7]

Data file 7

Table S1. RNA-seq statistics.

Spreadsheet (.xlsx)

Figshare, https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27275463.v1 [7]