Table 1 Overview of data files/data sets
Label | Name of Datafile/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
DataFile 1 | Table S1, Health data of the patient | MS Excel file (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27907251) [26] |
DataFile 2 | Raw short Illumina sequencing reads 1 and 2 | Sequence file (.fastq) | NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRR30916324) [27] |
DataFile 3 | Raw long nanopore sequencing reads | Sequence file (.fastq) | NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRR30916323) [28] |
DataFile 4 | Complete chromosomal genome and annotation of P. aeruginosa YK01 | GenBank file (.gbk) | NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc:CP166913.1) [29] |
DataFile 5 | Complete plasmid genome and annotation of pYK01 | GenBank file (.gbk) | NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc:CP166914.1) [30] |
DataFile 6 | Table S2, Quality control of assembly (QUAST and CheckM) | MS Excel file (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27168972.v3) [26] |
DataFile 7 | Table S3, Species identification of YK01 strain | MS Excel file (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169149) [26] |
DataFile 8 | Figure S3, P. aeruginosa YK01 chromosomal genome plot | Portable Document Format file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169251.v1) [26] |
DataFile 9 | Figure S4, P. aeruginosa YK01 plasmid genome plot | Portable Document Format file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27174903.v1) [26] |
DataFile 10 | Table S5, Summary of YK01 VFs, ARGs and anti-metal resistance genes | MS Excel file (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169194) [26] |
DataFile 11 | Figure S2, Comparative virulence of YK01, PAO1 and PA14 | Portable Document Format file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169245.v1) [26] |
DataFile 12 | Figure S5, P. aeruginosa YK01 plasmid alignments | Portable Document Format file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27174906.v1) [26] |
DataFile 13 | Table S6, Summary of YK01 CRISPR-cas system, prophage and biosynthetic gene clusters (BGCs) | MS Excel file (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169200) [26] |
DataFile 14 | Table S4, P. aeruginosa ST16 metadata from NCBI database | MS Excel file (.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169191) [26] |
DataFile 15 | Table S7, Tab-separated columnar list of core SNP sites using PAO1 (AE004091.2) as a reference genome | Text file (.txt) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27898566) [26] |
DataFile 16 | MLTree S1, IQ‐TREE – Maximum likelihood phylogenetic tree of P. aeruginosa ST16 | Newick tree format (.txt) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169227.v2) [26] |
DataFile 17 | Figure S1, Maximum likelihood phylogenetic tree of P. aeruginosa ST16 | Portable Document Format file (.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169233.v2) [26] |
DataFile 18 | Script S1, Summary of scripts of YK01 | Text file (.txt) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.27169269.v1) [26] |