Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Figure 1. Plant morphology of H. aristata | Image file (.png) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data file 2 | Table 1. Summary of sequencing data of H. aristata | Word file (.docx) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data file 3 | Table 2. Chromosomes information of H. aristata | Excel file (.xlsx) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data file 4 | Figure 2. Hi-C contact heatmaps of two haplotypes of H. aristata | Image file (.pdf) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data file 5 | Table 3. Protein sequence sets of 16 genomes of 15 species in Poaceae used for genome annotation | Excel file (.xlsx) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data set 1 | Hygroryza aristata genome and transcriptome sequencing data | BAM file (.bam) and FASTQ files (.fastq) | NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA019829 [9] |
Data set 2 | hari_v2.2_hap1 (genome assembly and annotation of hap1) | FASTA file (.fasta) and GFF file (.gff) | NGDC Genome warehouse, https://ngdc.cncb.ac.cn/gwh/Assembly/86182/show [12] |
Data set 3 | hari_v2.2_hap2 (genome assembly and annotation of hap2) | FASTA file (.fasta) and GFF file (.gff) | NGDC Genome warehouse, https://ngdc.cncb.ac.cn/gwh/Assembly/86205/show [13] |
Data set 4 | hari_v2.2_hap1.EDTA.TEanno.gff3.gz (repeat annotation of hap1) | GFF file (.gff) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data set 5 | hari_v2.2_hap2.EDTA.TEanno.gff3.gz (repeat annotation of hap2) | GFF file (.gff) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data set 6 | hari_v2.2_hap1_anno_v1.1.total.annatation.xlsx (integrated coding gene function annotations of hap1) | Excel file (.xlsx) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |
Data set 7 | hari_v2.2_hap2_anno_v1.1.total.annatation.xlsx (integrated coding gene function annotations of hap2) | Excel file (.xlsx) | Zenodo, https://doiorg.publicaciones.saludcastillayleon.es/10.5281/zenodo.14105124 [3] |