Table 1 Overview of data files and data sets
From: Draft genome assembly of the largemouth bass (Micropterus salmoides)
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Raw WGS long reads | Fastq file (.fastq.gz) | NCBI (https://identifiers.org/ncbi/insdc.sra:SRR12489157) [13] |
Data file 2 | Raw Hi-C reads | Fastq file (.fastq.gz) | NCBI (https://identifiers.org/ncbi/insdc.sra:SRR12605950) [14] |
Data file 3 | Raw illumina HiSeq reads | Fastq file (.fastq.gz) | NCBI (https://identifiers.org/ncbi/insdc.sra:SRR12443991) [15] |
Data file 4 | Raw ISO-seq reads | Fastq file (.fastq.gz) | NCBI (https://identifiers.org/ncbi/insdc.sra:SRR31179476) [16] |
Data file 5 | Full length transcripts consensus sequencing | Fastq file (.fastq.gz) | NCBI (https://identifiers.org/ncbi/insdc.sra:SRR12489156) [17] |
Data file 6 | Genome survey | Text file (.txt) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 7 | Assembled genome | Fasta file (.fasta) | NCBI (https://identifiers.org/ncbi/insdc.gca:GCA_019677235.1) [19] |
Data file 8 | BUSCO assessment of the assembly | Text file (.txt) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 9 | Merqury spectra-cn plot | Portable network graphics (.png) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 10 | Genome synteny and collinearity analysis | Portable document format(.pdf) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 11 | Predicted gene | Spreadsheet(.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 12 | Predicted genes - nucleotide sequences | Fasta file (.fasta) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 13 | Predicted genes - translated sequences | Fasta file (.fasta) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 14 | Gene annotation using GO, interPro a, KEGG, NR, Swissprot, TrEMBL. | Spreadsheet(.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 15 | Predicted ncRNA | Spreadsheet(.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |
Data file 16 | Comparison of assembly and annotation quality | Spreadsheet(.xlsx) | Figshare (https://doiorg.publicaciones.saludcastillayleon.es/10.6084/m9.figshare.26391472.v2) [18] |