Fig. 5
From: Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes
Examples of Citrus repeatome exploration available on the RepeatLoc Citrus interface. a. Users can select the Citrus species (1) and the repeated sequences (2) they wish to localize on chromosomes. Information on density, number of copies, and genome coverage is displayed (3). A specific region can be studied by clicking and dragging with the mouse on the chromosome (4) or by querying its positions (1). The results are displayed below (5), showing the size and position of the copies in the selected window. Data on the selected window can be downloaded using the link to the JBrowse (6). b. Screenshot of the JBrowse obtained following the link (6). Users can compare the position of the genes (7) and the repeated sequences (8) found in the region of interest