Table 1 List of the genome assemblies used for annotating repeated sequences
From: Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes
Scientific Name according to Ollitrault classification [58] | Scientific Name according to Tanaka classification [59] | Organism Common Name | Abbreviation in library | Assembly Accession | Source | Reference |
|---|---|---|---|---|---|---|
Citrus medica | Citrus medica | Citron | CITME | PRJEB78498 | EBI | [49] |
Citrus micrantha | Citrus micrantha | Papeda micrantha | CITMI | PRJEB78515 | EBI | [49] |
Citrus reticulata | Citrus reticulata | Wild mandarin Cleopatra | CITRE | PRJEB78537 | EBI | [49] |
Citrus maxima | Citrus maxima | Pummelo | CITMA | GCA_002006925.1 | GenBank | [46] |
Citrus x aurantium var. clementina | C. clementina | Clementine | CITCL | GCA_000493195.1 | GenBank | International Citrus Genome Consortium |
Citrus x aurantium var. sinensis haplotype A1 | C. sinensis | Valencia Sweet orange | CITSI_A1 | GCA_022201045.1 | GenBank | [60] |
Citrus x aurantium var. sinensis haplotype B1 | C. sinensis | Valencia Sweet orange | CITSI_B1 | GCA_022201065.1 | GenBank | [60] |
Citrus x limon var. limon haplotype Primary | C. limon | Lemon | CITLI_Pri | CGD21001 | CGD | [61] |
Citrus x limon var. limon haplotype Alternative | C. limon | Lemon | CITLI_Alt | CGD21001 | CGD | [61] |
Citrus cavaleriei | - | Ichang papeda | CCAV | GCA_002013975.2 | GenBank | [46] |
Citrus trifoliata | Citrus trifoliata | Hardy orange | CTRI | GCA_018350135.1 | GenBank | [62] |
Citrus x aurantium var. unshiu | Citrus unshiu | Satsuma mandarin | CUNS | GCA_002897195.1 | GenBank | [63] |
Citrus hindsii | Citrus hindsii | Hong Kong Kumquat | CHIN | PRJNA735863 | GenBank | [39] |
Citrus maxima (L.) Osbeck. | Citrus maxima (L.) Osbeck. | Pummelo cv.‘Cupi Majiayou’ | CMAX | PRJNA318855 | GenBank | [64] |
Murraya koenigii | - | Curry leaf | MURKO | GCA_025617385.1 | GenBank | - |
Atalantia buxifolia | - | - | ABUX | GCA_002013935.1 | GenBank | [46] |