Table 2 Classification and number of repeated sequences included in the final reference library
From: Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes
Number of consensus sequences | ||
|---|---|---|
Retrotransposons (Class I elements) | ||
LTR Copia (RLC) | Tork | 302 |
Sire | 191 | |
Retrofit | 379 | |
Oryco | 47 | |
Unclassified RLCs | 28 | |
LTR Gypsy (RLG) | Athila | 216 |
Tat | 168 | |
Crm | 50 | |
Reina | 118 | |
Del | 48 | |
Galadriel | 24 | |
Unclassified RLGs | 5 | |
LINEs (RIX) | 320 | |
SINEs (RSX) | 5 | |
Unclassified Class I | 4 | |
DNA transposons (Class II elements) | ||
TIRs | Mutator (DTM) | 279 |
hAT (DTA) | 223 | |
CACTA (DTC) | 107 | |
Pif-Harbinger (DTH) | 74 | |
Tc1-Mariner (DTT) | 20 | |
Unclassified TIRs (DTX) | 1 | |
MITEs | Unclassified MITEs (DXX-MITE) | 175 |
hAT (DTA-MITE) | 11 | |
Mutator (DTM-MITE) | 30 | |
Pif-Harbinger (DTH-MITE) | 3 | |
Helitron (DHX) | 26 | |
Unclassified TEs | 67 | |
TOTAL Transposable Elements | 2 921 | |
ECVs (Endogenous Caulimovirids) | 160 | |
Satellite DNAs | 10 | |
TOTAL Repeated sequences | 3 091 | |